PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462881777
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 259aa    MW: 28558.1 Da    PI: 10.6245
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462881777genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.8e-2477173190
                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsef 90 
                f k lt+sdv+k++rl +p+k ae++        gg+ + +  l++ed++g +W ++++++++s+++vltkGW +Fvk+++L +gD+v F+ ++g++++
  462881777  77 FSKRLTKSDVGKLNRLLIPRKEAERFfptalgamGGD-ALP-FLIFEDSTGVTWHFRYTFWQSSKTFVLTKGWIRFVKEKKLSDGDTVFFYqRTGEDSK 173
                8899****************************97555.566.6889*********************************************32243444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-2974176IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-2475173No hitNo description
SuperFamilySSF1019368.37E-2576178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.68977183IPR003340B3 DNA binding domain
PfamPF023621.9E-2077173IPR003340B3 DNA binding domain
SMARTSM010198.8E-1477183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGIIIEIQAG SRLQKEREMQ GKQTPMMHQS LLSMVNPVLS PIYGAPSAPM SAPVSLSGGG  60
ASALLGGGQG VDMDFMFSKR LTKSDVGKLN RLLIPRKEAE RFFPTALGAM GGDALPFLIF  120
EDSTGVTWHF RYTFWQSSKT FVLTKGWIRF VKEKKLSDGD TVFFYQRTGE DSKTMHRYIY  180
FKKQDHISFV PHDVPPPSGT LLRKALISSS HYTTNLGWKP VSSRSMGATP ANMPILSPSF  240
VPQVPTLGSG LGPAKKRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-267617313109DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-31B3 family protein